HL_7OI6_023

3D structure

PDB id

7OI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCAGAACCCAACC

Length

13 nucleotides

Bulged bases

7OI6|1|A|G|1161, 7OI6|1|A|A|1162, 7OI6|1|A|C|1169

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OI6_023 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2549

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7OI6|1|A|G|1158
7OI6|1|A|C|1159
7OI6|1|A|A|1160
7OI6|1|A|G|1161
7OI6|1|A|A|1162
7OI6|1|A|A|1163
7OI6|1|A|C|1164
7OI6|1|A|C|1165
7OI6|1|A|C|1166
7OI6|1|A|A|1167
7OI6|1|A|A|1168
7OI6|1|A|C|1169
7OI6|1|A|C|1170

Current chains

Chain A

16S rRNA

Nearby chains

Chain 1

rRNA methyltransferase 3, mitochondrial

Chain x

Probable ATP-dependent RNA helicase DDX28