HL_7OID_025

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

7OID|1|A|U|948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OID_025 not in the Motif Atlas

Geometric match to HL_5TBW_050

Geometric discrepancy: 0.2196

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7OID|1|A|C|942
7OID|1|A|U|943
7OID|1|A|U|944
7OID|1|A|A|945
7OID|1|A|A|946
7OID|1|A|A|947
7OID|1|A|U|948
7OID|1|A|A|949
7OID|1|A|G|950

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial