HL_7OID_033

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

7OID|1|A|G|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OID_033 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.5323

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

7OID|1|A|U|1345
7OID|1|A|G|1346
7OID|1|A|C|1347
7OID|1|A|A|1348
7OID|1|A|G|1349
7OID|1|A|C|1350
7OID|1|A|C|1351
7OID|1|A|G|1352

Current chains

Chain A

16S rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial