HL_7OID_043

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGCCUCACAGC

Length

12 nucleotides

Bulged bases

7OID|1|z|U|54

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OID_043 not in the Motif Atlas

Homologous match to HL_5EL4_250

Geometric discrepancy: 0.5936

The information below is about HL_5EL4_250

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

7OID|1|z|G|49
7OID|1|z|A|50
7OID|1|z|G|51
7OID|1|z|C|52
7OID|1|z|C|53
7OID|1|z|U|54
7OID|1|z|C|55
7OID|1|z|A|56
7OID|1|z|C|57
7OID|1|z|A|58
7OID|1|z|G|59
7OID|1|z|C|60

Current chains

Chain z

mitochondrial tRNA

Nearby chains

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1