HL_7OIE_033

3D structure

PDB id

7OIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

7OIE|1|A|G|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIE_033 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.3377

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7OIE|1|A|U|1345
7OIE|1|A|G|1346
7OIE|1|A|C|1347
7OIE|1|A|A|1348
7OIE|1|A|G|1349
7OIE|1|A|C|1350
7OIE|1|A|C|1351
7OIE|1|A|G|1352

Current chains

Chain A

16S rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial