HL_7OIF_045

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

7OIF|1|1|A|1780, 7OIF|1|1|U|1781, 7OIF|1|1|U|1782, 7OIF|1|1|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIF_045 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0911

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7OIF|1|1|U|1777
7OIF|1|1|U|1778
7OIF|1|1|U|1779
7OIF|1|1|A|1780
7OIF|1|1|U|1781
7OIF|1|1|U|1782
7OIF|1|1|A|1783
7OIF|1|1|A|1784
7OIF|1|1|A|1785
7OIF|1|1|A|1786
7OIF|1|1|A|1787

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

CspA transcriptional activator

Chain C

50S ribosomal protein L2

Chain c

50S ribosomal protein L34