3D structure

PDB id
7OIF (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUUAUUAAAAA
Length
11 nucleotides
Bulged bases
7OIF|1|1|A|1780, 7OIF|1|1|U|1781, 7OIF|1|1|U|1782, 7OIF|1|1|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OIF_045 not in the Motif Atlas
Homologous match to HL_5J7L_178
Geometric discrepancy: 0.0911
The information below is about HL_5J7L_178
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01962.2
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

7OIF|1|1|U|1777
7OIF|1|1|U|1778
7OIF|1|1|U|1779
7OIF|1|1|A|1780
7OIF|1|1|U|1781
7OIF|1|1|U|1782
7OIF|1|1|A|1783
7OIF|1|1|A|1784
7OIF|1|1|A|1785
7OIF|1|1|A|1786
7OIF|1|1|A|1787

Current chains

Chain 1
23S rRNA

Nearby chains

Chain B
CspA transcriptional activator
Chain C
50S ribosomal protein L2
Chain c
50S ribosomal protein L34

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