HL_7OIF_056
3D structure
- PDB id
- 7OIF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CspA-27 cotranslational folding intermediate 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCAAUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OIF_056 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.0817
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
7OIF|1|1|U|2324
7OIF|1|1|G|2325
7OIF|1|1|C|2326
7OIF|1|1|A|2327
7OIF|1|1|A|2328
7OIF|1|1|U|2329
7OIF|1|1|G|2330
7OIF|1|1|G|2331
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L27
- Chain z
- Transfer RNA; tRNA
Coloring options: