HL_7OIF_077

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIF_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0824

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7OIF|1|2|A|320
7OIF|1|2|A|321
7OIF|1|2|C|322
7OIF|1|2|U|323
7OIF|1|2|G|324
7OIF|1|2|A|325
7OIF|1|2|G|326
7OIF|1|2|A|327
7OIF|1|2|C|328
7OIF|1|2|A|329
7OIF|1|2|C|330
7OIF|1|2|G|331
7OIF|1|2|G|332
7OIF|1|2|U|333

Current chains

Chain 2

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20