3D structure

PDB id
7OIG (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUGACAGCC
Length
9 nucleotides
Bulged bases
7OIG|1|1|G|329, 7OIG|1|1|A|330, 7OIG|1|1|C|331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OIG_011 not in the Motif Atlas
Homologous match to HL_5J7L_144
Geometric discrepancy: 0.099
The information below is about HL_5J7L_144
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_27670.2
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
13

Unit IDs

7OIG|1|1|G|327
7OIG|1|1|U|328
7OIG|1|1|G|329
7OIG|1|1|A|330
7OIG|1|1|C|331
7OIG|1|1|A|332
7OIG|1|1|G|333
7OIG|1|1|C|334
7OIG|1|1|C|335

Current chains

Chain 1
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain T
50S ribosomal protein L24

Coloring options:


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