HL_7OIG_056

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIG_056 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.0779

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7OIG|1|1|U|2324
7OIG|1|1|G|2325
7OIG|1|1|C|2326
7OIG|1|1|A|2327
7OIG|1|1|A|2328
7OIG|1|1|U|2329
7OIG|1|1|G|2330
7OIG|1|1|G|2331

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain V

50S ribosomal protein L27

Chain z

Transfer RNA; tRNA