HL_7OII_077

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OII_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0802

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7OII|1|2|A|320
7OII|1|2|A|321
7OII|1|2|C|322
7OII|1|2|U|323
7OII|1|2|G|324
7OII|1|2|A|325
7OII|1|2|G|326
7OII|1|2|A|327
7OII|1|2|C|328
7OII|1|2|A|329
7OII|1|2|C|330
7OII|1|2|G|331
7OII|1|2|G|332
7OII|1|2|U|333

Current chains

Chain 2

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20