HL_7OII_104

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAUUGG(5MU)AGAC

Length

13 nucleotides

Bulged bases

7OII|1|z|G|18, 7OII|1|z|G|19

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OII_104 not in the Motif Atlas

Homologous match to HL_5AH5_005

Geometric discrepancy: 0.274

The information below is about HL_5AH5_005

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_68767.1

Basepair signature

cWW-cWS-tSH-cWS-F

Number of instances in this motif group

3

Unit IDs

7OII|1|z|G|12
7OII|1|z|A|13
7OII|1|z|A|14
7OII|1|z|A|15
7OII|1|z|U|16
7OII|1|z|U|17
7OII|1|z|G|18
7OII|1|z|G|19
7OII|1|z|5MU|20
7OII|1|z|A|21
7OII|1|z|G|22
7OII|1|z|A|23
7OII|1|z|C|24

Current chains

Chain z

tRNA-Leu

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5