HL_7OII_109

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OII_109 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.1871

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OII|1|1|G|2304
7OII|1|1|U|2305
7OII|1|1|C|2306
7OII|1|1|G|2307
7OII|1|1|G|2308
7OII|1|1|A|2309
7OII|1|1|C|2310
7OII|1|1|A|2311
7OII|1|1|U|2312

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain z

Transfer RNA; tRNA