HL_7OIZ_040

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7OIZ|1|a|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIZ_040 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0993

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7OIZ|1|a|G|194
7OIZ|1|a|A|195
7OIZ|1|a|A|196
7OIZ|1|a|A|197
7OIZ|1|a|C|198
7OIZ|1|a|A|199
7OIZ|1|a|U|200
7OIZ|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

50S ribosomal protein L28