HL_7OIZ_079

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

7OIZ|1|a|A|1913, 7OIZ|1|a|C|1914, 7OIZ|1|a|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OIZ_079 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.1227

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

7OIZ|1|a|G|1910
7OIZ|1|a|PSU|1911
7OIZ|1|a|A|1912
7OIZ|1|a|A|1913
7OIZ|1|a|C|1914
7OIZ|1|a|3TD|1915
7OIZ|1|a|A|1916
7OIZ|1|a|PSU|1917
7OIZ|1|a|A|1918
7OIZ|1|a|A|1919
7OIZ|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain V

Transfer RNA; tRNA

Chain X

mRNA