HL_7OJ0_008

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1033

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7OJ0|1|A|A|320
7OJ0|1|A|A|321
7OJ0|1|A|C|322
7OJ0|1|A|U|323
7OJ0|1|A|G|324
7OJ0|1|A|A|325
7OJ0|1|A|G|326
7OJ0|1|A|A|327
7OJ0|1|A|C|328
7OJ0|1|A|A|329
7OJ0|1|A|C|330
7OJ0|1|A|G|331
7OJ0|1|A|G|332
7OJ0|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20