HL_7OJ0_024

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7OJ0|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1665

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7OJ0|1|A|G|1089
7OJ0|1|A|U|1090
7OJ0|1|A|U|1091
7OJ0|1|A|A|1092
7OJ0|1|A|A|1093
7OJ0|1|A|G|1094
7OJ0|1|A|U|1095
7OJ0|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain G

30S ribosomal protein S7

Chain U

30S ribosomal protein S21