HL_7OJ0_047

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7OJ0|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_047 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0881

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7OJ0|1|a|G|410
7OJ0|1|a|G|411
7OJ0|1|a|A|412
7OJ0|1|a|C|413
7OJ0|1|a|C|414
7OJ0|1|a|A|415
7OJ0|1|a|U|416
7OJ0|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15