HL_7OJ0_062

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

7OJ0|1|a|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_062 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3845

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7OJ0|1|a|U|1065
7OJ0|1|a|U|1066
7OJ0|1|a|A|1067
7OJ0|1|a|G|1068
7OJ0|1|a|A|1069
7OJ0|1|a|A|1070
7OJ0|1|a|G|1071
7OJ0|1|a|C|1072
7OJ0|1|a|A|1073

Current chains

Chain a

23S rRNA

Nearby chains

Chain 8

Peptide chain release factor RF2

Chain 9

50S ribosomal protein L11