HL_7OJ0_082

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7OJ0|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_082 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0777

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7OJ0|1|a|G|1949
7OJ0|1|a|G|1950
7OJ0|1|a|U|1951
7OJ0|1|a|A|1952
7OJ0|1|a|A|1953
7OJ0|1|a|G|1954
7OJ0|1|a|U|1955
7OJ0|1|a|U|1956
7OJ0|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain 8

Peptide chain release factor RF2

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

50S ribosomal protein L14