HL_7OJ0_086

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7OJ0|1|a|A|2268, 7OJ0|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_086 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0869

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7OJ0|1|a|C|2264
7OJ0|1|a|U|2265
7OJ0|1|a|A|2266
7OJ0|1|a|A|2267
7OJ0|1|a|A|2268
7OJ0|1|a|G|2269
7OJ0|1|a|A|2270
7OJ0|1|a|G|2271
7OJ0|1|a|U|2272
7OJ0|1|a|A|2273
7OJ0|1|a|A|2274
7OJ0|1|a|C|2275
7OJ0|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27