HL_7OJ0_091

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

7OJ0|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_091 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0843

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OJ0|1|a|U|2404
7OJ0|1|a|G|2405
7OJ0|1|a|A|2406
7OJ0|1|a|A|2407
7OJ0|1|a|U|2408
7OJ0|1|a|G|2409
7OJ0|1|a|G|2410
7OJ0|1|a|A|2411
7OJ0|1|a|A|2412
7OJ0|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15