HL_7OJ0_092

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

7OJ0|1|a|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_092 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1563

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7OJ0|1|a|A|2471
7OJ0|1|a|G|2472
7OJ0|1|a|U|2473
7OJ0|1|a|U|2474
7OJ0|1|a|C|2475
7OJ0|1|a|A|2476
7OJ0|1|a|U|2477
7OJ0|1|a|A|2478
7OJ0|1|a|U|2479

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain 8

Peptide chain release factor RF2

Chain g

50S ribosomal protein L6