HL_7OJ0_098

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7OJ0|1|a|G|2751, 7OJ0|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_098 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0869

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7OJ0|1|a|C|2745
7OJ0|1|a|U|2746
7OJ0|1|a|G|2747
7OJ0|1|a|A|2748
7OJ0|1|a|A|2749
7OJ0|1|a|A|2750
7OJ0|1|a|G|2751
7OJ0|1|a|C|2752
7OJ0|1|a|A|2753
7OJ0|1|a|U|2754
7OJ0|1|a|C|2755
7OJ0|1|a|U|2756
7OJ0|1|a|A|2757
7OJ0|1|a|A|2758
7OJ0|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13