HL_7OJ0_106

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OJ0_106 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.1692

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OJ0|1|a|G|2304
7OJ0|1|a|U|2305
7OJ0|1|a|C|2306
7OJ0|1|a|G|2307
7OJ0|1|a|G|2308
7OJ0|1|a|A|2309
7OJ0|1|a|C|2310
7OJ0|1|a|A|2311
7OJ0|1|a|U|2312

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5