HL_7OLC_007

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

7OLC|1|1|G|212, 7OLC|1|1|A|213, 7OLC|1|1|G|214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1708

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7OLC|1|1|G|210
7OLC|1|1|U|211
7OLC|1|1|G|212
7OLC|1|1|A|213
7OLC|1|1|G|214
7OLC|1|1|A|215
7OLC|1|1|G|216
7OLC|1|1|C|217
7OLC|1|1|C|218

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein