HL_7OLC_028

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7OLC|1|1|A|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_028 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.49

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OLC|1|1|C|1222
7OLC|1|1|A|1223
7OLC|1|1|U|1224
7OLC|1|1|G|1225
7OLC|1|1|G|1226
7OLC|1|1|A|1227
7OLC|1|1|A|1228
7OLC|1|1|G|1229
7OLC|1|1|U|1230
7OLC|1|1|C|1231
7OLC|1|1|G|1232

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LK

60S ribosomal protein L12-like protein