HL_7OLC_068

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

7OLC|1|1|C|3145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_068 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1144

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7OLC|1|1|C|3143
7OLC|1|1|U|3144
7OLC|1|1|C|3145
7OLC|1|1|C|3146
7OLC|1|1|G|3147
7OLC|1|1|G|3148

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LS

60S ribosomal protein L20