HL_7OLC_069

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCGAAGUG

Length

9 nucleotides

Bulged bases

7OLC|1|1|A|3186, 7OLC|1|1|A|3187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_069 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.3028

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7OLC|1|1|C|3182
7OLC|1|1|U|3183
7OLC|1|1|C|3184
7OLC|1|1|G|3185
7OLC|1|1|A|3186
7OLC|1|1|A|3187
7OLC|1|1|G|3188
7OLC|1|1|U|3189
7OLC|1|1|G|3190

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein