HL_7OLC_092

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7OLC|1|2|U|1002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_092 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1131

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7OLC|1|2|G|995
7OLC|1|2|A|996
7OLC|1|2|U|997
7OLC|1|2|C|998
7OLC|1|2|A|999
7OLC|1|2|G|1000
7OLC|1|2|A|1001
7OLC|1|2|U|1002
7OLC|1|2|A|1003
7OLC|1|2|C|1004
7OLC|1|2|C|1005

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain SO

40S ribosomal protein S14-like protein