HL_7OLC_102

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLC_102 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2104

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OLC|1|2|C|1497
7OLC|1|2|G|1498
7OLC|1|2|A|1499
7OLC|1|2|G|1500
7OLC|1|2|A|1501
7OLC|1|2|G|1502

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Putative ribosomal protein

Chain ST

40S ribosomal protein S19-like protein