HL_7OLC_128
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAUUGCAGAAUUCCGUGAAUC
- Length
- 24 nucleotides
- Bulged bases
- 7OLC|1|4|C|83, 7OLC|1|4|C|84, 7OLC|1|4|U|86, 7OLC|1|4|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OLC_128 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.3569
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7OLC|1|4|G|68
7OLC|1|4|U|69
7OLC|1|4|G|70
7OLC|1|4|A|71
7OLC|1|4|A|72
7OLC|1|4|U|73
7OLC|1|4|U|74
7OLC|1|4|G|75
7OLC|1|4|C|76
7OLC|1|4|A|77
7OLC|1|4|G|78
7OLC|1|4|A|79
7OLC|1|4|A|80
7OLC|1|4|U|81
7OLC|1|4|U|82
7OLC|1|4|C|83
7OLC|1|4|C|84
7OLC|1|4|G|85
7OLC|1|4|U|86
7OLC|1|4|G|87
7OLC|1|4|A|88
7OLC|1|4|A|89
7OLC|1|4|U|90
7OLC|1|4|C|91
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- eL39
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