HL_7OLD_004

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_004 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1935

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7OLD|1|1|C|130
7OLD|1|1|U|131
7OLD|1|1|U|132
7OLD|1|1|C|133
7OLD|1|1|G|134
7OLD|1|1|G|135

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8

Chain LX

60S ribosomal protein L25-like protein

Chain Lh

Dolichyl-diphosphooligosaccharide--protein glycotransferase