HL_7OLD_012

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCUC

Length

6 nucleotides

Bulged bases

7OLD|1|1|U|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_012 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.2775

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

7OLD|1|1|G|456
7OLD|1|1|U|457
7OLD|1|1|U|458
7OLD|1|1|C|459
7OLD|1|1|U|460
7OLD|1|1|C|461

Current chains

Chain 1

26S rRNA

Nearby chains

Chain Lq

Putative 60S ribosomal protein