HL_7OLD_017
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OLD_017 not in the Motif Atlas
- Homologous match to HL_5TBW_016
- Geometric discrepancy: 0.0955
- The information below is about HL_5TBW_016
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7OLD|1|1|U|695
7OLD|1|1|G|696
7OLD|1|1|A|697
7OLD|1|1|A|698
7OLD|1|1|A|699
7OLD|1|1|G|700
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LQ
- Ribosomal protein L18-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Li
- 60S ribosomal protein L36
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