HL_7OLD_023

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7OLD|1|1|C|941, 7OLD|1|1|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1873

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7OLD|1|1|C|940
7OLD|1|1|C|941
7OLD|1|1|U|942
7OLD|1|1|C|943
7OLD|1|1|A|944
7OLD|1|1|G|945

Current chains

Chain 1

26S rRNA

Nearby chains

Chain La

60S ribosomal protein L28-like protein

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L44-like protein