HL_7OLD_028

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7OLD|1|1|U|1224, 7OLD|1|1|A|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_028 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3098

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OLD|1|1|C|1222
7OLD|1|1|A|1223
7OLD|1|1|U|1224
7OLD|1|1|G|1225
7OLD|1|1|G|1226
7OLD|1|1|A|1227
7OLD|1|1|A|1228
7OLD|1|1|G|1229
7OLD|1|1|U|1230
7OLD|1|1|C|1231
7OLD|1|1|G|1232

Current chains

Chain 1

26S rRNA

Nearby chains

Chain C

Elongation factor 2

Chain LK

60S ribosomal protein L12-like protein