HL_7OLD_033

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCGGUU

Length

7 nucleotides

Bulged bases

7OLD|1|1|G|1490, 7OLD|1|1|U|1494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_033 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.1884

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7OLD|1|1|A|1489
7OLD|1|1|G|1490
7OLD|1|1|C|1491
7OLD|1|1|G|1492
7OLD|1|1|G|1493
7OLD|1|1|U|1494
7OLD|1|1|U|1495

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19