HL_7OLD_043

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

7OLD|1|1|C|1846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_043 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.1414

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OLD|1|1|U|1842
7OLD|1|1|G|1843
7OLD|1|1|A|1844
7OLD|1|1|A|1845
7OLD|1|1|C|1846
7OLD|1|1|A|1847
7OLD|1|1|G|1848

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19