HL_7OLD_044

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7OLD|1|1|U|1905

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_044 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1188

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

7OLD|1|1|C|1903
7OLD|1|1|U|1904
7OLD|1|1|U|1905
7OLD|1|1|C|1906
7OLD|1|1|G|1907
7OLD|1|1|G|1908

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

60S ribosomal protein L41-A

Chain Lp

60S ribosomal protein L43-like protein