HL_7OLD_052

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGCG

Length

6 nucleotides

Bulged bases

7OLD|1|1|C|2503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_052 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1047

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7OLD|1|1|C|2499
7OLD|1|1|U|2500
7OLD|1|1|U|2501
7OLD|1|1|G|2502
7OLD|1|1|C|2503
7OLD|1|1|G|2504

Current chains

Chain 1

26S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1