HL_7OLD_061

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_061 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1648

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OLD|1|1|C|2799
7OLD|1|1|G|2800
7OLD|1|1|U|2801
7OLD|1|1|U|2802
7OLD|1|1|C|2803
7OLD|1|1|A|2804
7OLD|1|1|U|2805
7OLD|1|1|A|2806
7OLD|1|1|G|2807

Current chains

Chain 1

26S rRNA

Nearby chains

Chain C

Elongation factor 2

Chain LI

60S ribosomal protein L10-like protein

Chain Lm

Ubiquitin