HL_7OLD_076

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7OLD|1|2|U|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_076 not in the Motif Atlas

Geometric match to HL_4LGT_001

Geometric discrepancy: 0.2488

The information below is about HL_4LGT_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7OLD|1|2|C|226
7OLD|1|2|U|227
7OLD|1|2|U|228
7OLD|1|2|C|229
7OLD|1|2|G|230
7OLD|1|2|G|231

Current chains

Chain 2

18S rRNA

Nearby chains