HL_7OLD_080

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_080 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1988

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7OLD|1|2|U|365
7OLD|1|2|U|366
7OLD|1|2|A|367
7OLD|1|2|G|368
7OLD|1|2|G|369
7OLD|1|2|G|370

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2-like protein

Chain SJ

40S ribosomal protein s9-like protein

Chain SL

40S ribosomal protein S11-like protein

Chain SW

40S ribosomal protein S22-like protein