HL_7OLD_081

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

7OLD|1|2|A|397, 7OLD|1|2|C|399, 7OLD|1|2|G|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_081 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1595

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OLD|1|2|C|390
7OLD|1|2|C|391
7OLD|1|2|U|392
7OLD|1|2|G|393
7OLD|1|2|A|394
7OLD|1|2|G|395
7OLD|1|2|A|396
7OLD|1|2|A|397
7OLD|1|2|A|398
7OLD|1|2|C|399
7OLD|1|2|G|400
7OLD|1|2|G|401

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8