HL_7OLD_083

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACACG

Length

7 nucleotides

Bulged bases

7OLD|1|2|A|451, 7OLD|1|2|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_083 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2487

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7OLD|1|2|C|447
7OLD|1|2|G|448
7OLD|1|2|A|449
7OLD|1|2|C|450
7OLD|1|2|A|451
7OLD|1|2|C|452
7OLD|1|2|G|453

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SY

40S ribosomal protein S24