HL_7OLD_084

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

7OLD|1|2|C|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_084 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.2938

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7OLD|1|2|C|488
7OLD|1|2|U|489
7OLD|1|2|U|490
7OLD|1|2|U|491
7OLD|1|2|C|492
7OLD|1|2|G|493

Current chains

Chain 2

18S rRNA

Nearby chains