HL_7OLD_090

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_090 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.2639

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7OLD|1|2|A|898
7OLD|1|2|G|899
7OLD|1|2|G|900
7OLD|1|2|U|901
7OLD|1|2|G|902
7OLD|1|2|A|903
7OLD|1|2|A|904
7OLD|1|2|A|905
7OLD|1|2|U|906
7OLD|1|2|U|907

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain SB

40S ribosomal protein S1

Chain SO

40S ribosomal protein S14-like protein