HL_7OLD_093

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAUUUUUG

Length

9 nucleotides

Bulged bases

7OLD|1|2|U|1056, 7OLD|1|2|U|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_093 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3478

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7OLD|1|2|U|1053
7OLD|1|2|U|1054
7OLD|1|2|A|1055
7OLD|1|2|U|1056
7OLD|1|2|U|1057
7OLD|1|2|U|1058
7OLD|1|2|U|1059
7OLD|1|2|U|1060
7OLD|1|2|G|1061

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1

Chain Sb

Ribosomal protein s27-like protein