HL_7OLD_094

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_094 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.1352

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OLD|1|2|A|1081
7OLD|1|2|U|1082
7OLD|1|2|A|1083
7OLD|1|2|A|1084
7OLD|1|2|A|1085
7OLD|1|2|U|1086

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2-like protein

Chain SW

40S ribosomal protein S22-like protein

Chain Sa

40S ribosomal protein S26